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Custom axles... how much does that run? Sounds tricky too.
if you get a mr2 rear clip you should be fine using the mr2 axles.
the only problem where you come into needing custom axle stuff is using a lsd tranny and a non lsd axle, like if you had a gt and got a mr2 transmission.
this is because the half shafts for the lsd tranny are shorter than the ones for a non lsd tranny.
someone correct me if im wrong.