Well, I am official fed up with this engine. The ticking turned into knocking and it is no doubt it is rod knock.

I checked the engine with a stethoscope and that confirmed it. I am done with the 5sfte, time to get a new motor. I am going 4th gen 3sgte. It was a great learning experience but I am tired of the headaches of this motor. What did I learn from this experience:
1. If you are going to turbo an engine go standalone from the start!
2. Don't be in a hurry, rushing only leads to mistakes that can cost later
3. Go with a forged low compression bottom end from the start, you are going to want more boost, trust me!
4. Listen to the experienced folks on 6gc.net, they have a lot of knowledge and experience
5. Because of this build, I went from a person who had only changed spark plugs and drained fluids to a person who is comfortable with getting dirty with a motor and pulling an engine when needed.
6. Lastly, your engine is not some magical Initial D machine just because you worked on it. You need to treat the engine with respect and know its limits.
I am going to take some time off from working on this car. It will give me time to gather parts and get a master plan together for this swap. I am thinking I will pick this up again sometime in the spring. Thanks for everyone who helped me out with their knowledge. I will either update this thread or start a new one once I begin the swap. Below is the latest picture of my dead 5sfte.